Variant report

Variant	rs12274954
Chromosome Location	chr11:15960144-15960145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11023782	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023785	0.83[AMR][1000 genomes]
rs11023786	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275607	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276809	0.83[AMR][1000 genomes]
rs16932331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630606	0.83[AMR][1000 genomes]
rs6486269	0.83[AMR][1000 genomes]
rs6486271	0.83[AMR][1000 genomes]
rs7114674	0.83[AMR][1000 genomes]
rs7130109	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7930998	0.83[AMR][1000 genomes]
rs7946823	0.83[AMR][1000 genomes]
rs7952378	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15956400-15963000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15957800-15965200	Weak transcription	Colonic Mucosa	Colon
3	chr11:15958400-15960400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:15958800-15960200	Bivalent Enhancer	Fetal Stomach	stomach
5	chr11:15959000-15960400	Enhancers	Fetal Lung	lung
6	chr11:15959000-15960600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:15959200-15965200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:15959400-15960400	Active TSS	Stomach Smooth Muscle	stomach
9	chr11:15960000-15960200	Enhancers	Fetal Intestine Large	intestine
10	chr11:15960000-15960200	Enhancers	Fetal Intestine Small	intestine
11	chr11:15960000-15960200	Enhancers	Placenta	Placenta
12	chr11:15960000-15960200	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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