Variant report

Variant	rs7946823
Chromosome Location	chr11:15962982-15962983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15962859..15964423-chr11:16623575..16625861,2	K562	blood:
2	chr11:15961565..15963837-chr11:16628251..16630314,4	K562	blood:
3	chr11:15962417..15963395-chr11:16634617..16635816,8	K562	blood:
4	chr11:15962408..15963379-chr11:16627480..16628432,3	K562	blood:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11023782	0.83[AMR][1000 genomes]
rs11023785	1.00[AMR][1000 genomes]
rs11023786	0.83[AMR][1000 genomes]
rs12274954	0.83[AMR][1000 genomes]
rs12275607	0.83[AMR][1000 genomes]
rs12276809	1.00[AMR][1000 genomes]
rs16932331	0.83[AMR][1000 genomes]
rs28630606	1.00[AMR][1000 genomes]
rs6486269	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486271	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114674	1.00[AMR][1000 genomes]
rs7130109	0.83[AMR][1000 genomes]
rs73430946	0.83[AMR][1000 genomes]
rs7930998	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952378	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15956400-15963000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15957800-15965200	Weak transcription	Colonic Mucosa	Colon
3	chr11:15959200-15965200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:15962200-15964000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:15962400-15963000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:15962400-15963000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:15962400-15963000	Enhancers	Fetal Muscle Leg	muscle
8	chr11:15962400-15963800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:15962600-15963000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
10	chr11:15962600-15963000	Enhancers	Ovary	ovary
11	chr11:15962600-15963200	Enhancers	Adipose Nuclei	Adipose
12	chr11:15962600-15963200	Enhancers	Right Ventricle	heart
13	chr11:15962600-15963200	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr11:15962600-15963400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
15	chr11:15962600-15963400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr11:15962600-15963400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:15962600-15963400	Enhancers	K562	blood
18	chr11:15962800-15963000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:15962800-15963000	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr11:15962800-15963200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:15962800-15963200	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr11:15962800-15963200	Enhancers	Pancreas	Pancrea
23	chr11:15962800-15963200	Bivalent/Poised TSS	NHDF-Ad	bronchial
24	chr11:15962800-15963200	Active TSS	Osteobl	bone
25	chr11:15962800-15963400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr11:15962800-15963400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

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