Variant report

Variant	rs6486269
Chromosome Location	chr11:15948862-15948863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11023782	0.83[AMR][1000 genomes]
rs11023785	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023786	0.83[AMR][1000 genomes]
rs12274954	0.83[AMR][1000 genomes]
rs12275607	0.83[AMR][1000 genomes]
rs12276809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932331	0.83[AMR][1000 genomes]
rs28630606	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486271	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114674	1.00[AMR][1000 genomes]
rs7130109	0.83[AMR][1000 genomes]
rs73430946	0.83[AMR][1000 genomes]
rs7930998	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946823	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952378	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15945200-15950000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:15947800-15950400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:15948200-15955600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:15948800-15950000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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