Variant report

Variant	rs12275607
Chromosome Location	chr11:15955267-15955268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11023782	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11023785	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11023786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274954	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276809	0.83[AMR][1000 genomes]
rs16932331	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630606	0.83[AMR][1000 genomes]
rs6486269	0.83[AMR][1000 genomes]
rs6486271	0.83[AMR][1000 genomes]
rs7114674	0.83[AMR][1000 genomes]
rs7130109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7930998	0.83[AMR][1000 genomes]
rs7946823	0.83[AMR][1000 genomes]
rs7952378	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15948200-15955600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15955000-15956200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:15955000-15957800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:15955000-15958200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:15955200-15955400	Bivalent Enhancer	HepG2	liver
6	chr11:15955200-15955400	Enhancers	Osteobl	bone
7	chr11:15955200-15955600	Enhancers	Duodenum Mucosa	Duodenum
8	chr11:15955200-15956000	Enhancers	Fetal Intestine Small	intestine
9	chr11:15955200-15956400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:15955200-15957600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:15955200-15958000	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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