Variant report

Variant	rs11023782
Chromosome Location	chr11:15943808-15943809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11023785	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11023786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274954	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12276809	0.83[AMR][1000 genomes]
rs16932331	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630606	0.83[AMR][1000 genomes]
rs6486269	0.83[AMR][1000 genomes]
rs6486271	0.83[AMR][1000 genomes]
rs7114674	0.83[AMR][1000 genomes]
rs7130109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7930998	0.83[AMR][1000 genomes]
rs7946823	0.83[AMR][1000 genomes]
rs7952378	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv818799	chr11:15930472-15946803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522229	chr11:15941099-15946803	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15940800-15945400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:15941000-15945000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:15942800-15946000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:15943000-15944800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:15943400-15944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:15943400-15947000	Weak transcription	HMEC	breast
7	chr11:15943600-15946200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links