Variant report

Variant	rs6486271
Chromosome Location	chr11:15979946-15979947
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11023782	0.83[AMR][1000 genomes]
rs11023785	1.00[AMR][1000 genomes]
rs11023786	0.83[AMR][1000 genomes]
rs12274954	0.83[AMR][1000 genomes]
rs12275607	0.83[AMR][1000 genomes]
rs12276809	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16932331	0.83[AMR][1000 genomes]
rs28630606	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114674	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130109	0.83[AMR][1000 genomes]
rs73430946	0.83[AMR][1000 genomes]
rs7930998	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946823	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7952378	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15963000-15985800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15972800-15989200	Weak transcription	Aorta	Aorta
3	chr11:15977400-15985600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:15977600-15985600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:15979600-15984400	Weak transcription	Right Atrium	heart
6	chr11:15979800-15980200	Enhancers	Psoas Muscle	Psoas
7	chr11:15979800-15980200	Enhancers	Right Ventricle	heart
8	chr11:15979800-15980800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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