Variant report

Variant	rs73442155
Chromosome Location	chr15:76740608-76740609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs4082688	0.87[AFR][1000 genomes]
rs57026560	0.87[AFR][1000 genomes]
rs57931886	0.87[AFR][1000 genomes]
rs60794367	0.87[AFR][1000 genomes]
rs7170187	0.87[AFR][1000 genomes]
rs7174377	0.87[AFR][1000 genomes]
rs7175175	0.87[AFR][1000 genomes]
rs73442152	1.00[AFR][1000 genomes]
rs73442176	1.00[AFR][1000 genomes]
rs73442185	1.00[AFR][1000 genomes]
rs73442188	1.00[AFR][1000 genomes]
rs73444261	1.00[AFR][1000 genomes]
rs73444264	1.00[AFR][1000 genomes]
rs73444270	0.87[AFR][1000 genomes]
rs73444271	0.87[AFR][1000 genomes]
rs73444275	0.87[AFR][1000 genomes]
rs73448115	0.87[AFR][1000 genomes]
rs73450219	0.87[AFR][1000 genomes]
rs73450231	0.87[AFR][1000 genomes]
rs73450253	0.87[AFR][1000 genomes]
rs73457057	1.00[AFR][1000 genomes]
rs73457073	1.00[AFR][1000 genomes]
rs73457079	1.00[AFR][1000 genomes]
rs73461319	0.87[AFR][1000 genomes]
rs73461327	0.87[AFR][1000 genomes]
rs73461329	0.87[AFR][1000 genomes]
rs73461332	0.87[AFR][1000 genomes]
rs8039673	1.00[AFR][1000 genomes]
rs8043089	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
4	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:76725800-76754400	Weak transcription	Ovary	ovary
6	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
7	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:76732200-76741200	Weak transcription	Fetal Brain Male	brain
9	chr15:76736600-76741000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:76740200-76740800	Enhancers	Colonic Mucosa	Colon
11	chr15:76740200-76740800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr15:76740200-76741000	Strong transcription	Primary B cells from cord blood	blood
13	chr15:76740600-76757600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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