Variant report

Variant	rs73469048
Chromosome Location	chr6:77830986-77830987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs57093966	1.00[AMR][1000 genomes]
rs57243180	1.00[AMR][1000 genomes]
rs57634610	1.00[AMR][1000 genomes]
rs59004023	1.00[AMR][1000 genomes]
rs59548675	1.00[AMR][1000 genomes]
rs61420151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73457261	1.00[AMR][1000 genomes]
rs73457262	1.00[AMR][1000 genomes]
rs73457278	1.00[AMR][1000 genomes]
rs73457288	1.00[AMR][1000 genomes]
rs73459321	1.00[AMR][1000 genomes]
rs73459326	1.00[AMR][1000 genomes]
rs73459328	1.00[AMR][1000 genomes]
rs73459332	1.00[AMR][1000 genomes]
rs73459357	1.00[AMR][1000 genomes]
rs73461419	1.00[AMR][1000 genomes]
rs73461421	1.00[AMR][1000 genomes]
rs73461422	1.00[AMR][1000 genomes]
rs73461428	1.00[AMR][1000 genomes]
rs73461431	1.00[AMR][1000 genomes]
rs73461436	1.00[AMR][1000 genomes]
rs73461444	1.00[AMR][1000 genomes]
rs73461447	1.00[AMR][1000 genomes]
rs73461450	1.00[AMR][1000 genomes]
rs73461453	1.00[AMR][1000 genomes]
rs73461459	1.00[AMR][1000 genomes]
rs73461466	1.00[AMR][1000 genomes]
rs73461468	1.00[AMR][1000 genomes]
rs73461473	1.00[AMR][1000 genomes]
rs73461477	1.00[AMR][1000 genomes]
rs73461481	1.00[AMR][1000 genomes]
rs73461482	1.00[AMR][1000 genomes]
rs73461483	1.00[AMR][1000 genomes]
rs73463204	1.00[AMR][1000 genomes]
rs73463208	1.00[AMR][1000 genomes]
rs73463213	1.00[AMR][1000 genomes]
rs73463214	1.00[AMR][1000 genomes]
rs73463219	1.00[AMR][1000 genomes]
rs73465216	1.00[AMR][1000 genomes]
rs73465258	1.00[AMR][1000 genomes]
rs73465263	1.00[AMR][1000 genomes]
rs73465266	1.00[AMR][1000 genomes]
rs73465272	1.00[AMR][1000 genomes]
rs73465299	1.00[AMR][1000 genomes]
rs73467013	1.00[AMR][1000 genomes]
rs73467025	1.00[AMR][1000 genomes]
rs73467032	1.00[AMR][1000 genomes]
rs73467034	1.00[AMR][1000 genomes]
rs73467038	1.00[AMR][1000 genomes]
rs73467040	1.00[AMR][1000 genomes]
rs73467044	1.00[AMR][1000 genomes]
rs73467046	1.00[AMR][1000 genomes]
rs73467049	1.00[AMR][1000 genomes]
rs73467091	1.00[AMR][1000 genomes]
rs73467093	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7756022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3417770	chr6:77670473-77963253	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3402238	chr6:77670497-77963278	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1022311	chr6:77684420-77941524	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv886223	chr6:77686247-77950949	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1033731	chr6:77750293-77941524	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv538323	chr6:77750293-77941524	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77822800-77833600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:77828400-77834400	Weak transcription	Gastric	stomach

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