Variant report

Variant	rs59548675
Chromosome Location	chr6:77747136-77747137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs57093966	1.00[AMR][1000 genomes]
rs57243180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57634610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59004023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61420151	1.00[AMR][1000 genomes]
rs73457261	1.00[AMR][1000 genomes]
rs73457262	1.00[AMR][1000 genomes]
rs73457278	1.00[AMR][1000 genomes]
rs73457288	1.00[AMR][1000 genomes]
rs73459321	1.00[AMR][1000 genomes]
rs73459326	1.00[AMR][1000 genomes]
rs73459328	1.00[AMR][1000 genomes]
rs73459332	1.00[AMR][1000 genomes]
rs73459357	1.00[AMR][1000 genomes]
rs73461419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461431	1.00[AMR][1000 genomes]
rs73461436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461444	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461447	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461453	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461459	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461466	1.00[AMR][1000 genomes]
rs73461468	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461477	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461482	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73461483	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463204	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463213	1.00[AMR][1000 genomes]
rs73463214	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465216	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465258	1.00[AMR][1000 genomes]
rs73465263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465266	1.00[AMR][1000 genomes]
rs73465272	1.00[AMR][1000 genomes]
rs73465299	1.00[AMR][1000 genomes]
rs73467013	1.00[AMR][1000 genomes]
rs73467025	1.00[AMR][1000 genomes]
rs73467032	1.00[AMR][1000 genomes]
rs73467034	1.00[AMR][1000 genomes]
rs73467038	1.00[AMR][1000 genomes]
rs73467040	1.00[AMR][1000 genomes]
rs73467044	1.00[AMR][1000 genomes]
rs73467046	1.00[AMR][1000 genomes]
rs73467049	1.00[AMR][1000 genomes]
rs73467091	1.00[AMR][1000 genomes]
rs73467093	1.00[AMR][1000 genomes]
rs73467100	1.00[AMR][1000 genomes]
rs73469003	1.00[AMR][1000 genomes]
rs73469010	1.00[AMR][1000 genomes]
rs73469015	1.00[AMR][1000 genomes]
rs73469019	1.00[AMR][1000 genomes]
rs73469025	1.00[AMR][1000 genomes]
rs73469028	1.00[AMR][1000 genomes]
rs73469030	1.00[AMR][1000 genomes]
rs73469033	1.00[AMR][1000 genomes]
rs73469035	1.00[AMR][1000 genomes]
rs73469039	1.00[AMR][1000 genomes]
rs73469044	1.00[AMR][1000 genomes]
rs73469048	1.00[AMR][1000 genomes]
rs73469054	1.00[AMR][1000 genomes]
rs7756022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv603806	chr6:77587889-77787815	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1021812	chr6:77589219-77792085	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1030186	chr6:77606604-77781304	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1026517	chr6:77622310-77827418	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3417770	chr6:77670473-77963253	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3402238	chr6:77670497-77963278	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1022311	chr6:77684420-77941524	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv886223	chr6:77686247-77950949	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv603807	chr6:77734250-77807794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77744000-77748400	Weak transcription	NH-A	brain
2	chr6:77744200-77750000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:77744200-77750200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:77746200-77748200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:77747000-77747600	Enhancers	HMEC	breast
6	chr6:77747000-77747600	Enhancers	NHEK	skin

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