Variant report

Variant	rs73473369
Chromosome Location	chr9:86628605-86628606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57364890	1.00[AMR][1000 genomes]
rs57371575	1.00[AMR][1000 genomes]
rs57996505	1.00[AMR][1000 genomes]
rs58090060	1.00[AMR][1000 genomes]
rs59038995	1.00[AMR][1000 genomes]
rs59227663	1.00[AMR][1000 genomes]
rs59962995	1.00[AMR][1000 genomes]
rs60035746	1.00[AMR][1000 genomes]
rs60639174	1.00[AMR][1000 genomes]
rs60889426	1.00[AMR][1000 genomes]
rs61372781	1.00[AMR][1000 genomes]
rs61708723	1.00[AMR][1000 genomes]
rs6559755	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6559759	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035469	1.00[AMR][1000 genomes]
rs7038536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469353	1.00[AMR][1000 genomes]
rs73469354	1.00[AMR][1000 genomes]
rs73469361	1.00[AMR][1000 genomes]
rs73469367	1.00[AMR][1000 genomes]
rs73469373	1.00[AMR][1000 genomes]
rs73469375	1.00[AMR][1000 genomes]
rs73469382	1.00[AMR][1000 genomes]
rs73469388	1.00[AMR][1000 genomes]
rs73471355	1.00[AMR][1000 genomes]
rs73471356	1.00[AMR][1000 genomes]
rs73471359	1.00[AMR][1000 genomes]
rs73471374	1.00[AMR][1000 genomes]
rs73471377	1.00[AMR][1000 genomes]
rs73471381	1.00[AMR][1000 genomes]
rs73471387	1.00[AMR][1000 genomes]
rs73471388	1.00[AMR][1000 genomes]
rs73471390	1.00[AMR][1000 genomes]
rs73473366	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73473371	1.00[AMR][1000 genomes]
rs7856484	1.00[AMR][1000 genomes]
rs7872631	1.00[AMR][1000 genomes]
rs7875551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv3328820	chr9:86613612-86634313	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv614762	chr9:86625243-86700593	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86596400-86632400	Weak transcription	Spleen	Spleen
2	chr9:86597400-86628800	Weak transcription	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links