Variant report

Variant	rs73471381
Chromosome Location	chr9:86601618-86601619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86599996..86602953-chr9:86874625..86876335,2	MCF-7	breast:
2	chr9:86601005..86603787-chr9:86605588..86607387,3	K562	blood:
3	chr9:86599801..86602585-chr9:86615309..86617946,2	K562	blood:
4	chr9:86561198..86563897-chr9:86600302..86603108,2	MCF-7	breast:
5	chr9:86600023..86602701-chr9:86605294..86607803,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57364890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57371575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58090060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59038995	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59227663	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59962995	1.00[AMR][1000 genomes]
rs60035746	1.00[AMR][1000 genomes]
rs60639174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60889426	1.00[AMR][1000 genomes]
rs61372781	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61708723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6559755	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6559759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035469	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7038536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469353	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469361	1.00[AMR][1000 genomes]
rs73469367	1.00[AMR][1000 genomes]
rs73469373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469382	1.00[AMR][1000 genomes]
rs73469388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73473366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73473369	1.00[AMR][1000 genomes]
rs73473371	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856484	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7872631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7875551	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	esv3366490	chr9:86541369-86608868	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	nsv1043703	chr9:86545917-86603545	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
6	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86596400-86632400	Weak transcription	Spleen	Spleen
2	chr9:86596600-86601800	Weak transcription	Pancreas	Pancrea
3	chr9:86596600-86603200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:86596600-86610600	Weak transcription	Esophagus	oesophagus
5	chr9:86596600-86613400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:86596600-86613800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:86596600-86616000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:86596600-86617000	Weak transcription	Lung	lung
9	chr9:86596600-86618200	Weak transcription	Ovary	ovary
10	chr9:86596600-86619600	Weak transcription	Gastric	stomach
11	chr9:86596800-86601800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:86596800-86601800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:86596800-86601800	Weak transcription	Left Ventricle	heart
14	chr9:86596800-86601800	Weak transcription	HSMM	muscle
15	chr9:86596800-86602000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr9:86596800-86603200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:86596800-86603200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:86596800-86603200	Weak transcription	Fetal Thymus	thymus
19	chr9:86596800-86605400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:86596800-86606600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:86596800-86613200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:86596800-86614400	Weak transcription	HSMMtube	muscle
23	chr9:86596800-86616000	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:86596800-86616200	Weak transcription	Brain Angular Gyrus	brain
25	chr9:86596800-86616200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:86596800-86619600	Weak transcription	Small Intestine	intestine
27	chr9:86596800-86621400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:86596800-86621600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:86597000-86602000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:86597000-86602800	Weak transcription	Fetal Intestine Small	intestine
31	chr9:86597000-86603200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr9:86597000-86603200	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:86597000-86603400	Weak transcription	Fetal Intestine Large	intestine
34	chr9:86597000-86603600	Weak transcription	Thymus	Thymus
35	chr9:86597000-86609600	Weak transcription	Primary T cells from cord blood	blood
36	chr9:86597000-86614200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:86597000-86616000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:86597000-86616000	Weak transcription	Fetal Lung	lung
39	chr9:86597000-86617200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:86597000-86621200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:86597000-86621600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr9:86597200-86601800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr9:86597200-86603200	Weak transcription	HMEC	breast
44	chr9:86597200-86603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:86597200-86607200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:86597200-86614200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:86597200-86615400	Weak transcription	NHDF-Ad	bronchial
48	chr9:86597200-86616000	Weak transcription	Fetal Kidney	kidney
49	chr9:86597200-86616800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr9:86597200-86619000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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