Variant report

Variant	rs73469361
Chromosome Location	chr9:86561949-86561950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86561645..86563612-chr9:86594555..86596170,2	MCF-7	breast:
2	chr9:86561198..86563897-chr9:86600302..86603108,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165119	Chromatin interaction
ENSG00000178966	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57364890	1.00[AMR][1000 genomes]
rs57371575	1.00[AMR][1000 genomes]
rs57996505	1.00[AMR][1000 genomes]
rs58090060	1.00[AMR][1000 genomes]
rs59038995	1.00[AMR][1000 genomes]
rs59227663	1.00[AMR][1000 genomes]
rs59962995	1.00[AMR][1000 genomes]
rs60035746	1.00[AMR][1000 genomes]
rs60639174	1.00[AMR][1000 genomes]
rs60889426	1.00[AMR][1000 genomes]
rs61372781	1.00[AMR][1000 genomes]
rs61708723	1.00[AMR][1000 genomes]
rs6559755	1.00[AMR][1000 genomes]
rs6559759	1.00[AMR][1000 genomes]
rs7035469	1.00[AMR][1000 genomes]
rs7038536	1.00[AMR][1000 genomes]
rs73469353	1.00[AMR][1000 genomes]
rs73469354	1.00[AMR][1000 genomes]
rs73469367	1.00[AMR][1000 genomes]
rs73469373	1.00[AMR][1000 genomes]
rs73469375	1.00[AMR][1000 genomes]
rs73469382	1.00[AMR][1000 genomes]
rs73469388	1.00[AMR][1000 genomes]
rs73471355	1.00[AMR][1000 genomes]
rs73471356	1.00[AMR][1000 genomes]
rs73471359	1.00[AMR][1000 genomes]
rs73471374	1.00[AMR][1000 genomes]
rs73471377	1.00[AMR][1000 genomes]
rs73471381	1.00[AMR][1000 genomes]
rs73471387	1.00[AMR][1000 genomes]
rs73471388	1.00[AMR][1000 genomes]
rs73471390	1.00[AMR][1000 genomes]
rs73473366	1.00[AMR][1000 genomes]
rs73473369	1.00[AMR][1000 genomes]
rs73473371	1.00[AMR][1000 genomes]
rs7856484	1.00[AMR][1000 genomes]
rs7872631	1.00[AMR][1000 genomes]
rs7875551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	esv3366490	chr9:86541369-86608868	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
8	nsv1043703	chr9:86545917-86603545	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86536600-86571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:86543000-86571000	Weak transcription	Esophagus	oesophagus
3	chr9:86547200-86570200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr9:86548000-86567000	Weak transcription	GM12878-XiMat	blood
5	chr9:86549000-86570200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:86550200-86570400	Weak transcription	Aorta	Aorta
7	chr9:86550400-86569200	Weak transcription	Fetal Heart	heart
8	chr9:86550400-86570400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:86550600-86569000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:86550800-86563800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:86550800-86568800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:86550800-86570400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:86551000-86570400	Weak transcription	Stomach Mucosa	stomach
14	chr9:86551000-86570400	Weak transcription	NH-A	brain
15	chr9:86551600-86570000	Weak transcription	Fetal Brain Male	brain
16	chr9:86551600-86570200	Weak transcription	NHEK	skin
17	chr9:86552000-86562000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:86552000-86570400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:86552000-86570400	Weak transcription	Spleen	Spleen
20	chr9:86553000-86570400	Weak transcription	Colonic Mucosa	Colon
21	chr9:86553200-86562200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:86553400-86562000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr9:86553400-86563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:86553600-86562000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:86553600-86562600	Strong transcription	Fetal Muscle Leg	muscle
26	chr9:86553600-86570000	Strong transcription	Fetal Stomach	stomach
27	chr9:86553800-86569800	Weak transcription	Hela-S3	cervix
28	chr9:86554400-86570400	Weak transcription	Psoas Muscle	Psoas
29	chr9:86554600-86562400	Weak transcription	Right Ventricle	heart
30	chr9:86554600-86570200	Weak transcription	Brain Substantia Nigra	brain
31	chr9:86554800-86570400	Weak transcription	Pancreas	Pancrea
32	chr9:86554800-86570600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:86555400-86570200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:86555600-86570200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:86556000-86570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:86556000-86571000	Weak transcription	Gastric	stomach
37	chr9:86556200-86570400	Weak transcription	HSMMtube	muscle
38	chr9:86556600-86562400	Strong transcription	Fetal Intestine Large	intestine
39	chr9:86557000-86571000	Weak transcription	Lung	lung
40	chr9:86557400-86570000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:86557400-86570400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr9:86557600-86565600	Weak transcription	Thymus	Thymus
43	chr9:86557600-86566600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:86557600-86570200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr9:86557800-86570400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:86557800-86570400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:86558000-86562600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:86558000-86570000	Weak transcription	Dnd41	blood
49	chr9:86558000-86570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:86558000-86570200	Weak transcription	Brain Hippocampus Middle	brain

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