Variant report

Variant	rs73471356
Chromosome Location	chr9:86580677-86580678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86551919..86553846-chr9:86578831..86580851,2	K562	blood:
2	chr9:86579856..86582669-chr9:86606095..86609007,3	K562	blood:
3	chr9:86555752..86558711-chr9:86579434..86581068,2	K562	blood:

Variant related genes	Relation type
ENSG00000202523	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57364890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57371575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57996505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58090060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59038995	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59227663	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59962995	1.00[AMR][1000 genomes]
rs60035746	1.00[AMR][1000 genomes]
rs60639174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60889426	1.00[AMR][1000 genomes]
rs61372781	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61708723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6559755	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6559759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035469	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7038536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469353	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469361	1.00[AMR][1000 genomes]
rs73469367	1.00[AMR][1000 genomes]
rs73469373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469382	1.00[AMR][1000 genomes]
rs73469388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73473366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73473369	1.00[AMR][1000 genomes]
rs73473371	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7856484	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7872631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7875551	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	esv3366490	chr9:86541369-86608868	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
8	nsv1043703	chr9:86545917-86603545	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86571800-86584600	Weak transcription	Spleen	Spleen
2	chr9:86572000-86586200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:86572200-86581000	Weak transcription	Primary T cells from cord blood	blood
4	chr9:86572200-86581000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:86572200-86581200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:86572200-86581600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:86572200-86581800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:86572200-86581800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:86572200-86581800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr9:86572200-86582000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr9:86572200-86582000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:86572200-86584600	Weak transcription	Ovary	ovary
13	chr9:86572200-86586600	Weak transcription	Aorta	Aorta
14	chr9:86572200-86593200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:86572400-86580800	Weak transcription	Primary B cells from cord blood	blood
16	chr9:86572400-86581000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:86572400-86581000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:86572400-86581000	Weak transcription	Brain Germinal Matrix	brain
19	chr9:86572400-86581200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:86572400-86581200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:86572400-86581200	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:86572400-86581200	Weak transcription	Fetal Thymus	thymus
23	chr9:86572400-86581200	Weak transcription	Left Ventricle	heart
24	chr9:86572400-86581200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:86572400-86581200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:86572400-86581400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr9:86572400-86581400	Weak transcription	GM12878-XiMat	blood
28	chr9:86572400-86581400	Weak transcription	HUVEC	blood vessel
29	chr9:86572400-86581600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr9:86572400-86581600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:86572400-86581800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:86572400-86581800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr9:86572400-86581800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:86572400-86582000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:86572400-86582200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:86572400-86582200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:86572400-86582600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:86572400-86582600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr9:86572400-86584000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr9:86572400-86584400	Weak transcription	Fetal Heart	heart
41	chr9:86572400-86584600	Weak transcription	Thymus	Thymus
42	chr9:86572400-86585800	Weak transcription	Pancreas	Pancrea
43	chr9:86572400-86586000	Weak transcription	Gastric	stomach
44	chr9:86572400-86586000	Weak transcription	Psoas Muscle	Psoas
45	chr9:86572400-86586000	Weak transcription	Right Ventricle	heart
46	chr9:86572400-86590000	Weak transcription	Right Atrium	heart
47	chr9:86572600-86580800	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr9:86572600-86580800	Weak transcription	Dnd41	blood
49	chr9:86572600-86581000	Weak transcription	Fetal Stomach	stomach
50	chr9:86572600-86581200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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