Variant report

Variant	rs73481288
Chromosome Location	chr13:48689348-48689349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11148101	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11148102	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11148103	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11148104	1.00[EUR][1000 genomes]
rs11148105	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11840013	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11841025	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11841089	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11841517	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11842190	1.00[EUR][1000 genomes]
rs11842654	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12427769	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12428098	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12428738	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12428782	1.00[EUR][1000 genomes]
rs12428797	1.00[EUR][1000 genomes]
rs12429895	1.00[EUR][1000 genomes]
rs12429926	1.00[EUR][1000 genomes]
rs12430608	1.00[EUR][1000 genomes]
rs12584124	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12584625	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12584738	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12585232	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12585517	1.00[EUR][1000 genomes]
rs12585766	1.00[EUR][1000 genomes]
rs1998989	0.96[ASN][1000 genomes]
rs2148247	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2148939	0.96[ASN][1000 genomes]
rs2182785	0.96[ASN][1000 genomes]
rs2296572	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35535367	1.00[EUR][1000 genomes]
rs3742108	1.00[EUR][1000 genomes]
rs3782979	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56670154	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58080658	1.00[EUR][1000 genomes]
rs59447207	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60828855	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61403342	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6561438	0.89[ASN][1000 genomes]
rs7317685	0.96[ASN][1000 genomes]
rs73477042	1.00[EUR][1000 genomes]
rs73479175	1.00[EUR][1000 genomes]
rs73479183	1.00[EUR][1000 genomes]
rs73479186	1.00[EUR][1000 genomes]
rs73479190	1.00[AMR][1000 genomes]
rs73479195	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73479199	1.00[EUR][1000 genomes]
rs73481207	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73481217	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73481223	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73481228	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73481239	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73481240	1.00[AMR][1000 genomes]
rs73481250	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73481261	1.00[EUR][1000 genomes]
rs73481266	1.00[EUR][1000 genomes]
rs73481271	1.00[EUR][1000 genomes]
rs73483108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73483122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73487241	1.00[EUR][1000 genomes]
rs73487264	1.00[EUR][1000 genomes]
rs73487269	1.00[EUR][1000 genomes]
rs73489207	1.00[EUR][1000 genomes]
rs73489232	1.00[EUR][1000 genomes]
rs73493331	1.00[EUR][1000 genomes]
rs73493345	1.00[EUR][1000 genomes]
rs7990408	1.00[EUR][1000 genomes]
rs7999270	0.96[ASN][1000 genomes]
rs9526450	0.96[ASN][1000 genomes]
rs9526454	0.96[ASN][1000 genomes]
rs9526455	0.96[ASN][1000 genomes]
rs9534959	0.96[ASN][1000 genomes]
rs9534966	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48686600-48700000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:48687200-48694800	Weak transcription	Right Atrium	heart
3	chr13:48688600-48692000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:48688800-48691000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:48689000-48689400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr13:48689000-48690800	Weak transcription	Adipose Nuclei	Adipose
7	chr13:48689200-48690600	Weak transcription	HepG2	liver

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