Variant report

Variant	rs73487264
Chromosome Location	chr13:48502157-48502158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48501618..48503669-chr13:48506224..48510200,3	K562	blood:

Variant related genes	Relation type
ENSG00000260388	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11148101	1.00[EUR][1000 genomes]
rs11148102	1.00[EUR][1000 genomes]
rs11148103	1.00[EUR][1000 genomes]
rs11148104	1.00[EUR][1000 genomes]
rs11148105	1.00[EUR][1000 genomes]
rs11838821	1.00[EUR][1000 genomes]
rs11840013	1.00[EUR][1000 genomes]
rs11840146	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11840694	1.00[EUR][1000 genomes]
rs11841025	1.00[EUR][1000 genomes]
rs11841089	1.00[EUR][1000 genomes]
rs11841517	1.00[EUR][1000 genomes]
rs11842190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11842654	1.00[EUR][1000 genomes]
rs12427769	1.00[EUR][1000 genomes]
rs12428098	1.00[EUR][1000 genomes]
rs12428738	1.00[EUR][1000 genomes]
rs12428782	1.00[EUR][1000 genomes]
rs12428797	1.00[EUR][1000 genomes]
rs12429895	1.00[EUR][1000 genomes]
rs12429926	1.00[EUR][1000 genomes]
rs12430608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12584124	1.00[EUR][1000 genomes]
rs12584625	1.00[EUR][1000 genomes]
rs12584738	1.00[EUR][1000 genomes]
rs12585232	1.00[EUR][1000 genomes]
rs12585517	1.00[EUR][1000 genomes]
rs12585580	1.00[EUR][1000 genomes]
rs12585766	1.00[EUR][1000 genomes]
rs12585890	1.00[EUR][1000 genomes]
rs2148247	1.00[EUR][1000 genomes]
rs2296572	1.00[EUR][1000 genomes]
rs35535367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3742108	1.00[EUR][1000 genomes]
rs3782979	1.00[EUR][1000 genomes]
rs4477588	0.82[ASN][1000 genomes]
rs56670154	1.00[EUR][1000 genomes]
rs57530384	1.00[EUR][1000 genomes]
rs57916684	1.00[EUR][1000 genomes]
rs58080658	1.00[EUR][1000 genomes]
rs59447207	1.00[EUR][1000 genomes]
rs59776562	1.00[EUR][1000 genomes]
rs59845585	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59991172	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60398625	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60718136	1.00[EUR][1000 genomes]
rs60828855	1.00[EUR][1000 genomes]
rs61403342	1.00[EUR][1000 genomes]
rs73477042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73479175	1.00[EUR][1000 genomes]
rs73479183	1.00[EUR][1000 genomes]
rs73479186	1.00[EUR][1000 genomes]
rs73479195	1.00[EUR][1000 genomes]
rs73479199	1.00[EUR][1000 genomes]
rs73481207	1.00[EUR][1000 genomes]
rs73481217	1.00[EUR][1000 genomes]
rs73481223	1.00[EUR][1000 genomes]
rs73481228	1.00[EUR][1000 genomes]
rs73481239	1.00[EUR][1000 genomes]
rs73481250	1.00[EUR][1000 genomes]
rs73481261	1.00[EUR][1000 genomes]
rs73481266	1.00[EUR][1000 genomes]
rs73481271	1.00[EUR][1000 genomes]
rs73481288	1.00[EUR][1000 genomes]
rs73483108	1.00[EUR][1000 genomes]
rs73483122	1.00[EUR][1000 genomes]
rs73483220	1.00[EUR][1000 genomes]
rs73483277	1.00[EUR][1000 genomes]
rs73483293	1.00[EUR][1000 genomes]
rs73485326	1.00[EUR][1000 genomes]
rs73485330	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73485345	1.00[EUR][1000 genomes]
rs73485349	1.00[EUR][1000 genomes]
rs73485356	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73487241	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73487269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73487297	0.83[AFR][1000 genomes]
rs73489207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73489232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73493331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73493345	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7990408	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1803690	chr13:48470681-48508091	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48477000-48506400	Weak transcription	Psoas Muscle	Psoas
2	chr13:48492200-48510800	Weak transcription	Left Ventricle	heart
3	chr13:48495200-48506800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:48496600-48506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:48501000-48531200	Weak transcription	Spleen	Spleen
6	chr13:48502000-48530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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