Variant report

Variant	rs73477042
Chromosome Location	chr13:48573529-48573530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48572405..48574497-chr13:48807171..48809286,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136156	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11148101	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11148102	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11148103	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11148104	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11148105	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11838821	1.00[EUR][1000 genomes]
rs11839719	0.89[AFR][1000 genomes]
rs11840013	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11840146	1.00[EUR][1000 genomes]
rs11840694	1.00[EUR][1000 genomes]
rs11841025	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11841089	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11841517	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11842190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11842654	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12427769	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428098	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428738	1.00[EUR][1000 genomes]
rs12428782	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428797	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12429137	0.81[AFR][1000 genomes]
rs12429895	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12429926	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12430608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12583188	0.81[AFR][1000 genomes]
rs12584124	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12584625	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12584738	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12585232	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12585517	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12585580	1.00[EUR][1000 genomes]
rs12585766	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12585890	1.00[EUR][1000 genomes]
rs1410116	0.85[ASN][1000 genomes]
rs2148247	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2296572	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35535367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742108	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3782979	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4942733	0.89[AFR][1000 genomes]
rs56670154	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57530384	1.00[EUR][1000 genomes]
rs57916684	1.00[EUR][1000 genomes]
rs58080658	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59447207	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59776562	1.00[EUR][1000 genomes]
rs59845585	1.00[EUR][1000 genomes]
rs59991172	1.00[EUR][1000 genomes]
rs60398625	1.00[EUR][1000 genomes]
rs60718136	1.00[EUR][1000 genomes]
rs60828855	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61403342	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7327265	0.81[AFR][1000 genomes]
rs73477058	0.82[AFR][1000 genomes]
rs73479175	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73479183	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73479186	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73479195	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73479199	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73479200	0.87[ASN][1000 genomes]
rs73481207	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481212	0.87[ASN][1000 genomes]
rs73481217	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481223	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481228	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481239	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481250	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481261	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481266	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481271	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73481288	1.00[EUR][1000 genomes]
rs73483108	1.00[EUR][1000 genomes]
rs73483122	1.00[EUR][1000 genomes]
rs73483277	1.00[EUR][1000 genomes]
rs73483293	1.00[EUR][1000 genomes]
rs73485326	1.00[EUR][1000 genomes]
rs73485330	1.00[EUR][1000 genomes]
rs73485345	1.00[EUR][1000 genomes]
rs73485349	1.00[EUR][1000 genomes]
rs73485356	1.00[EUR][1000 genomes]
rs73487241	1.00[EUR][1000 genomes]
rs73487264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73487269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73489207	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73489232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73493331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73493339	0.86[AFR][1000 genomes]
rs73493345	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73493351	0.86[AFR][1000 genomes]
rs7982426	0.89[AFR][1000 genomes]
rs7990408	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7991049	0.86[AFR][1000 genomes]
rs7999360	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430556	chr13:48516799-48679099	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48514400-48574000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr13:48534400-48574400	Weak transcription	Small Intestine	intestine
3	chr13:48537200-48574200	Weak transcription	Colonic Mucosa	Colon
4	chr13:48537400-48574000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:48537400-48574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:48538400-48574000	Weak transcription	Hela-S3	cervix
7	chr13:48540000-48574200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:48543000-48574400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:48546600-48574400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:48546600-48574800	Weak transcription	Spleen	Spleen
11	chr13:48548000-48574200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr13:48548800-48574400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr13:48550800-48574200	Weak transcription	Ovary	ovary
14	chr13:48551000-48573800	Weak transcription	Fetal Heart	heart
15	chr13:48551000-48574400	Weak transcription	HSMMtube	muscle
16	chr13:48552000-48574000	Weak transcription	A549	lung
17	chr13:48559800-48574200	Weak transcription	Brain Anterior Caudate	brain
18	chr13:48560000-48574000	Weak transcription	Fetal Kidney	kidney
19	chr13:48560800-48574600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:48561200-48574200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:48561600-48574200	Weak transcription	Osteobl	bone
22	chr13:48563800-48574200	Weak transcription	Fetal Brain Male	brain
23	chr13:48565400-48574800	Weak transcription	Gastric	stomach
24	chr13:48565600-48574000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr13:48565600-48574200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:48565600-48574200	Weak transcription	Fetal Brain Female	brain
27	chr13:48565600-48574400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr13:48565600-48574400	Weak transcription	Right Ventricle	heart
29	chr13:48565800-48574200	Weak transcription	HMEC	breast
30	chr13:48566800-48574200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr13:48567400-48573800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr13:48567400-48574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr13:48567600-48574000	Weak transcription	Primary B cells from cord blood	blood
34	chr13:48567800-48573800	Weak transcription	HUVEC	blood vessel
35	chr13:48567800-48574000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr13:48567800-48574000	Weak transcription	Fetal Lung	lung
37	chr13:48567800-48574000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr13:48567800-48574200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr13:48567800-48574200	Weak transcription	Brain Germinal Matrix	brain
40	chr13:48567800-48574200	Weak transcription	NHLF	lung
41	chr13:48567800-48574400	Weak transcription	Esophagus	oesophagus
42	chr13:48567800-48574400	Weak transcription	Thymus	Thymus
43	chr13:48567800-48574800	Weak transcription	Pancreas	Pancrea
44	chr13:48568000-48574000	Weak transcription	K562	blood
45	chr13:48568000-48574200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr13:48568000-48574200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr13:48568000-48574200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr13:48568000-48574200	Weak transcription	Fetal Intestine Small	intestine
49	chr13:48568000-48574400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr13:48568000-48574400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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