Variant report

Variant	rs12585517
Chromosome Location	chr13:48661119-48661120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48660649..48663796-chr13:48667591..48670650,5	MCF-7	breast:
2	chr13:48653583..48656519-chr13:48659541..48662277,2	K562	blood:

Variant related genes	Relation type
ENSG00000136146	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11148101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838821	1.00[EUR][1000 genomes]
rs11840013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11840146	1.00[EUR][1000 genomes]
rs11841025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842190	1.00[EUR][1000 genomes]
rs11842654	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12427769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428738	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12428782	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428797	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429926	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12430608	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12584124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584738	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410116	0.98[ASN][1000 genomes]
rs2148247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296572	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35535367	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3742108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3782979	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56670154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57530384	1.00[EUR][1000 genomes]
rs58080658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59447207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59845585	1.00[EUR][1000 genomes]
rs59991172	1.00[EUR][1000 genomes]
rs60398625	1.00[EUR][1000 genomes]
rs60828855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61403342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73477042	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73479175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479200	1.00[ASN][1000 genomes]
rs73481207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481212	1.00[ASN][1000 genomes]
rs73481217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73481288	1.00[EUR][1000 genomes]
rs73483108	1.00[EUR][1000 genomes]
rs73483122	1.00[EUR][1000 genomes]
rs73485345	1.00[EUR][1000 genomes]
rs73485349	1.00[EUR][1000 genomes]
rs73485356	1.00[EUR][1000 genomes]
rs73487241	1.00[EUR][1000 genomes]
rs73487264	1.00[EUR][1000 genomes]
rs73487269	1.00[EUR][1000 genomes]
rs73489207	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73489232	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493331	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73493345	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7990408	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430556	chr13:48516799-48679099	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48640200-48661200	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr13:48647000-48662400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:48647400-48663600	Weak transcription	Small Intestine	intestine
4	chr13:48648600-48667400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:48649600-48663400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:48649800-48661200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:48649800-48661600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr13:48649800-48662200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:48650000-48662400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:48650200-48662400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr13:48650400-48664800	Weak transcription	Fetal Heart	heart
12	chr13:48652800-48663200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:48652800-48668200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:48653000-48667800	Weak transcription	Stomach Mucosa	stomach
15	chr13:48653000-48668200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:48653200-48668200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:48653800-48667600	Weak transcription	A549	lung
18	chr13:48654200-48666800	Weak transcription	Pancreas	Pancrea
19	chr13:48654200-48667600	Weak transcription	Right Ventricle	heart
20	chr13:48655400-48662200	Weak transcription	Hela-S3	cervix
21	chr13:48655400-48666000	Weak transcription	Esophagus	oesophagus
22	chr13:48655400-48666000	Weak transcription	Spleen	Spleen
23	chr13:48655400-48667000	Weak transcription	Gastric	stomach
24	chr13:48655400-48667600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr13:48655400-48668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:48655400-48668200	Weak transcription	Aorta	Aorta
27	chr13:48655600-48666800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr13:48656200-48666000	Weak transcription	K562	blood
29	chr13:48656200-48667000	Weak transcription	HUVEC	blood vessel
30	chr13:48656200-48668000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr13:48657400-48666800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr13:48657400-48666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr13:48657400-48667600	Weak transcription	Brain Angular Gyrus	brain
34	chr13:48657400-48668000	Weak transcription	HSMMtube	muscle
35	chr13:48657600-48662600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr13:48657600-48663200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr13:48657600-48664800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr13:48657600-48667000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:48657600-48667600	Weak transcription	Brain Substantia Nigra	brain
40	chr13:48657800-48667200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr13:48658000-48667000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr13:48658000-48667000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr13:48658000-48667200	Weak transcription	NH-A	brain
44	chr13:48658000-48667600	Weak transcription	Colonic Mucosa	Colon
45	chr13:48658200-48663600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr13:48658200-48667800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr13:48658400-48666800	Weak transcription	Lung	lung
48	chr13:48658400-48667000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr13:48658600-48666600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr13:48658800-48667600	Weak transcription	Brain Hippocampus Middle	brain

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