Variant report

Variant	rs35535367
Chromosome Location	chr13:48558963-48558964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48541315..48543966-chr13:48557894..48560541,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11148101	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11148102	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11148103	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11148104	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11148105	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11838821	1.00[EUR][1000 genomes]
rs11839719	0.89[AFR][1000 genomes]
rs11840013	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11840146	1.00[EUR][1000 genomes]
rs11840694	1.00[EUR][1000 genomes]
rs11841025	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11841089	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11841517	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11842190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11842654	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12427769	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12428098	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12428738	1.00[EUR][1000 genomes]
rs12428782	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12428797	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12429137	0.81[AFR][1000 genomes]
rs12429895	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12429926	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12430608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583188	0.81[AFR][1000 genomes]
rs12584124	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12584625	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12584738	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12585232	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12585517	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12585580	1.00[EUR][1000 genomes]
rs12585766	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12585890	1.00[EUR][1000 genomes]
rs1410116	0.82[ASN][1000 genomes]
rs2148247	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296572	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3742108	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3782979	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4942733	0.89[AFR][1000 genomes]
rs56670154	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57530384	1.00[EUR][1000 genomes]
rs57916684	1.00[EUR][1000 genomes]
rs58080658	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59447207	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59776562	1.00[EUR][1000 genomes]
rs59845585	1.00[EUR][1000 genomes]
rs59991172	1.00[EUR][1000 genomes]
rs60398625	1.00[EUR][1000 genomes]
rs60718136	1.00[EUR][1000 genomes]
rs60828855	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61403342	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7327265	0.81[AFR][1000 genomes]
rs73477042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73477058	0.82[AFR][1000 genomes]
rs73479175	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73479183	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73479186	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73479195	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73479199	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73479200	0.83[ASN][1000 genomes]
rs73481207	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481212	0.83[ASN][1000 genomes]
rs73481217	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481223	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481228	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481239	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481250	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481261	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481266	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481271	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481288	1.00[EUR][1000 genomes]
rs73483108	1.00[EUR][1000 genomes]
rs73483122	1.00[EUR][1000 genomes]
rs73483220	1.00[EUR][1000 genomes]
rs73483277	1.00[EUR][1000 genomes]
rs73483293	1.00[EUR][1000 genomes]
rs73485326	1.00[EUR][1000 genomes]
rs73485330	1.00[EUR][1000 genomes]
rs73485345	1.00[EUR][1000 genomes]
rs73485349	1.00[EUR][1000 genomes]
rs73485356	1.00[EUR][1000 genomes]
rs73487241	1.00[EUR][1000 genomes]
rs73487264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73487269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73489207	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73489232	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73493331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73493339	0.86[AFR][1000 genomes]
rs73493345	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73493351	0.86[AFR][1000 genomes]
rs7982426	0.89[AFR][1000 genomes]
rs7990408	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7991049	0.86[AFR][1000 genomes]
rs7999360	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430556	chr13:48516799-48679099	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48514400-48574000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr13:48532200-48565200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr13:48532400-48559400	Weak transcription	Gastric	stomach
4	chr13:48532400-48565200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:48534000-48560800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:48534200-48573200	Weak transcription	Brain Angular Gyrus	brain
7	chr13:48534400-48574400	Weak transcription	Small Intestine	intestine
8	chr13:48535000-48564800	Weak transcription	NHLF	lung
9	chr13:48537200-48574200	Weak transcription	Colonic Mucosa	Colon
10	chr13:48537400-48560200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:48537400-48574000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr13:48537400-48574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:48538000-48567200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:48538400-48574000	Weak transcription	Hela-S3	cervix
15	chr13:48538600-48559800	Weak transcription	HUVEC	blood vessel
16	chr13:48538800-48564800	Weak transcription	Brain Germinal Matrix	brain
17	chr13:48539600-48571200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr13:48540000-48574200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:48540200-48559000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr13:48540800-48565000	Weak transcription	NH-A	brain
21	chr13:48542400-48564800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr13:48542400-48565200	Weak transcription	Psoas Muscle	Psoas
23	chr13:48542400-48567000	Weak transcription	Esophagus	oesophagus
24	chr13:48542800-48559000	Weak transcription	HSMM	muscle
25	chr13:48543000-48574400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr13:48543400-48560600	Weak transcription	HepG2	liver
27	chr13:48546400-48559400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr13:48546400-48564600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr13:48546400-48565200	Weak transcription	Pancreas	Pancrea
30	chr13:48546600-48559200	Weak transcription	Brain Substantia Nigra	brain
31	chr13:48546600-48574400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:48546600-48574800	Weak transcription	Spleen	Spleen
33	chr13:48546800-48559000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr13:48546800-48559000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr13:48546800-48559200	Weak transcription	Colon Smooth Muscle	Colon
36	chr13:48546800-48560600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr13:48546800-48564200	Weak transcription	Lung	lung
38	chr13:48546800-48564600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr13:48546800-48567000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr13:48546800-48567200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr13:48546800-48571600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr13:48547000-48559200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr13:48547400-48559200	Weak transcription	Brain Anterior Caudate	brain
44	chr13:48547800-48559200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr13:48548000-48559000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr13:48548000-48559000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr13:48548000-48559000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr13:48548000-48559600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr13:48548000-48574200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr13:48548800-48559200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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