Variant report

Variant	rs73534426
Chromosome Location	chr6:121842470-121842471
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1535824	1.00[EUR][1000 genomes]
rs17083625	1.00[EUR][1000 genomes]
rs57110992	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59599989	1.00[EUR][1000 genomes]
rs61309343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915013	1.00[EUR][1000 genomes]
rs73534403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73534407	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73767029	1.00[EUR][1000 genomes]
rs73767042	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9482164	1.00[EUR][1000 genomes]
rs9490256	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121830600-121843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:121837600-121843000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:121838200-121844000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:121839000-121843000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:121841000-121842600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:121841000-121845400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:121841200-121842600	Flanking Active TSS	A549	lung
8	chr6:121841200-121845400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:121841400-121842600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:121841400-121843000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:121841600-121842600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:121841600-121842600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:121841600-121842800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:121841600-121842800	Weak transcription	Ovary	ovary
15	chr6:121841600-121843600	Enhancers	NHDF-Ad	bronchial
16	chr6:121841600-121843800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:121841800-121842600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:121841800-121843600	Enhancers	Osteobl	bone
19	chr6:121841800-121844200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:121842000-121842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:121842000-121842800	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:121842000-121842800	Weak transcription	HSMM	muscle
23	chr6:121842000-121843400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:121842000-121843400	Enhancers	NHLF	lung
25	chr6:121842000-121843800	Weak transcription	Aorta	Aorta
26	chr6:121842000-121844200	Enhancers	HMEC	breast
27	chr6:121842200-121843400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:121842200-121843400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:121842200-121843400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:121842200-121843400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:121842200-121843400	Flanking Active TSS	HUVEC	blood vessel
32	chr6:121842200-121844200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr6:121842200-121844200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:121842200-121844800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:121842200-121844800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:121842200-121847400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:121842400-121842600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:121842400-121842800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:121842400-121843400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:121842400-121843400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:121842400-121843400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:121842400-121843400	Flanking Active TSS	NH-A	brain
43	chr6:121842400-121843600	Weak transcription	Fetal Stomach	stomach
44	chr6:121842400-121843600	Enhancers	HSMMtube	muscle
45	chr6:121842400-121844800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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