Variant report

Variant	rs9490256
Chromosome Location	chr6:121751609-121751610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1535824	1.00[EUR][1000 genomes]
rs17083625	0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56899462	1.00[EUR][1000 genomes]
rs57110992	1.00[EUR][1000 genomes]
rs59599989	1.00[EUR][1000 genomes]
rs59863462	1.00[EUR][1000 genomes]
rs60820338	1.00[EUR][1000 genomes]
rs61309343	1.00[EUR][1000 genomes]
rs61582983	1.00[EUR][1000 genomes]
rs6915013	1.00[EUR][1000 genomes]
rs73534403	1.00[EUR][1000 genomes]
rs73534407	1.00[EUR][1000 genomes]
rs73534426	1.00[EUR][1000 genomes]
rs73767029	1.00[EUR][1000 genomes]
rs73767042	1.00[EUR][1000 genomes]
rs9482164	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490257	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121751400-121751800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:121751400-121752200	Enhancers	Liver	Liver
3	chr6:121751400-121752400	Enhancers	HepG2	liver
4	chr6:121751600-121751800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:121751600-121751800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:121751600-121751800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:121751600-121751800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:121751600-121751800	Enhancers	A549	lung
9	chr6:121751600-121751800	Enhancers	Osteobl	bone
10	chr6:121751600-121752000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:121751600-121752800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:121751600-121752800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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