Variant report

Variant	rs9482164
Chromosome Location	chr6:121758688-121758689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121753097..121755980-chr6:121757909..121760037,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1535824	1.00[EUR][1000 genomes]
rs17083625	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56899462	1.00[EUR][1000 genomes]
rs57110992	1.00[EUR][1000 genomes]
rs59599989	1.00[EUR][1000 genomes]
rs59863462	1.00[EUR][1000 genomes]
rs60820338	1.00[EUR][1000 genomes]
rs61309343	1.00[EUR][1000 genomes]
rs61582983	1.00[EUR][1000 genomes]
rs6915013	1.00[EUR][1000 genomes]
rs73534403	1.00[EUR][1000 genomes]
rs73534407	1.00[EUR][1000 genomes]
rs73534426	1.00[EUR][1000 genomes]
rs73767029	1.00[EUR][1000 genomes]
rs73767042	1.00[EUR][1000 genomes]
rs9490256	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121755600-121760000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:121756000-121758800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:121756000-121760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121756000-121760800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:121756000-121761600	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:121756200-121761600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:121756200-121763600	Active TSS	Aorta	Aorta
8	chr6:121756200-121764200	Active TSS	Right Atrium	heart
9	chr6:121756400-121759200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:121756400-121759400	Active TSS	Adipose Nuclei	Adipose
11	chr6:121756400-121760400	Active TSS	A549	lung
12	chr6:121756400-121760600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:121756400-121760800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
15	chr6:121756600-121758800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:121756600-121759000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:121756600-121759000	Active TSS	Osteobl	bone
18	chr6:121756600-121759200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:121756600-121759200	Active TSS	Fetal Kidney	kidney
20	chr6:121756600-121759200	Active TSS	HUVEC	blood vessel
21	chr6:121756600-121759400	Active TSS	Muscle Satellite Cultured Cells	--
22	chr6:121756600-121759400	Active TSS	Fetal Intestine Large	intestine
23	chr6:121756600-121759400	Active TSS	Fetal Intestine Small	intestine
24	chr6:121756600-121759400	Active TSS	Fetal Lung	lung
25	chr6:121756600-121759400	Active TSS	HSMM	muscle
26	chr6:121756600-121759600	Active TSS	Brain Germinal Matrix	brain
27	chr6:121756600-121759800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:121756600-121759800	Active TSS	Placenta Amnion	Placenta Amnion
29	chr6:121756600-121760200	Active TSS	NH-A	brain
30	chr6:121756600-121760600	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:121756600-121760600	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:121756600-121760800	Active TSS	NHDF-Ad	bronchial
33	chr6:121756600-121761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr6:121756600-121761200	Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chr6:121756600-121761400	Active TSS	H9 Cell Line	embryonic stem cell
36	chr6:121756600-121761400	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr6:121756600-121761600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:121756600-121761600	Active TSS	Ovary	ovary
39	chr6:121756600-121761600	Active TSS	Stomach Smooth Muscle	stomach
40	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:121756800-121758800	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr6:121756800-121759200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:121756800-121759200	Active TSS	Duodenum Mucosa	Duodenum
45	chr6:121756800-121759200	Active TSS	HSMMtube	muscle
46	chr6:121756800-121759400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:121756800-121759400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:121756800-121759400	Active TSS	NHEK	skin
49	chr6:121756800-121759800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:121756800-121759800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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