Variant report

Variant	rs73767042
Chromosome Location	chr6:121845100-121845101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1535824	1.00[EUR][1000 genomes]
rs17083625	1.00[EUR][1000 genomes]
rs57110992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59599989	1.00[EUR][1000 genomes]
rs61309343	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6915013	1.00[EUR][1000 genomes]
rs73534403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73534407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73534426	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73767029	1.00[EUR][1000 genomes]
rs9482164	1.00[EUR][1000 genomes]
rs9490256	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121841000-121845400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:121841200-121845400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:121842200-121847400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:121842800-121845400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:121843400-121845400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:121843400-121845600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:121843400-121845800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:121843600-121845200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:121843800-121845200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:121844000-121845200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:121844000-121845200	Enhancers	Ovary	ovary
12	chr6:121844000-121845200	Enhancers	A549	lung
13	chr6:121844000-121847400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:121844200-121845200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:121844200-121845200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:121844200-121845400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:121844400-121845400	Enhancers	Osteobl	bone
18	chr6:121844400-121845600	Enhancers	NH-A	brain
19	chr6:121844400-121847000	Weak transcription	Aorta	Aorta
20	chr6:121844600-121845200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:121844600-121845800	Enhancers	HUVEC	blood vessel
22	chr6:121844800-121845200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:121844800-121845400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:121844800-121845400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:121844800-121845400	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:121844800-121845600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:121845000-121845400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:121845000-121847000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:121845000-121847400	Weak transcription	Colon Smooth Muscle	Colon

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