Variant report

Variant	rs73545893
Chromosome Location	chr6:113796791-113796792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2637522	1.00[AMR][1000 genomes]
rs2637530	1.00[AMR][1000 genomes]
rs2801417	1.00[AMR][1000 genomes]
rs2801418	1.00[AMR][1000 genomes]
rs2801432	1.00[AMR][1000 genomes]
rs2842839	1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842847	1.00[AMR][1000 genomes]
rs73533634	1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73535709	1.00[AMR][1000 genomes]
rs73543865	0.91[AFR][1000 genomes]
rs73545870	1.00[AMR][1000 genomes]
rs7749447	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1021815	chr6:113703567-113799956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv518991	chr6:113760526-113799618	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv522088	chr6:113788356-113809585	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113791800-113797000	Weak transcription	Osteobl	bone
2	chr6:113792000-113797600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113792400-113797800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:113796400-113799200	Enhancers	Adipose Nuclei	Adipose
5	chr6:113796600-113797000	Enhancers	Lung	lung
6	chr6:113796600-113797200	Enhancers	Pancreas	Pancrea
7	chr6:113796600-113798200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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