Variant report

Variant	rs73535709
Chromosome Location	chr6:113625544-113625545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARCKS-17	chr6:113625196-113625571	l_3235_chr6:113612412-113625571_testes

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1491087	1.00[AMR][1000 genomes]
rs2637522	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637530	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774522	1.00[AMR][1000 genomes]
rs2801417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801418	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801421	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801432	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801435	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842836	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842844	0.94[AFR][1000 genomes]
rs2842847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58633564	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327299	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531803	1.00[AMR][1000 genomes]
rs73531810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531821	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531823	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533619	1.00[AMR][1000 genomes]
rs73533634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73544585	1.00[AMR][1000 genomes]
rs73545870	1.00[AMR][1000 genomes]
rs73545893	1.00[AMR][1000 genomes]
rs73546314	1.00[AMR][1000 genomes]
rs73546326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113623000-113625800	Enhancers	Osteobl	bone
2	chr6:113623200-113628000	Weak transcription	NHEK	skin
3	chr6:113623800-113625800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:113625200-113625600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:113625400-113625600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:113625400-113625800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:113625400-113629000	Weak transcription	NHDF-Ad	bronchial

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