Variant report

Variant	rs73533613
Chromosome Location	chr6:113613937-113613938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1491087	1.00[AMR][1000 genomes]
rs2637522	1.00[AMR][1000 genomes]
rs2637530	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774522	1.00[AMR][1000 genomes]
rs2801417	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801418	1.00[AMR][1000 genomes]
rs2801421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801435	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842836	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842839	1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842847	1.00[AMR][1000 genomes]
rs58633564	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327299	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531803	1.00[AMR][1000 genomes]
rs73531810	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531818	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531821	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531823	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533619	1.00[AMR][1000 genomes]
rs73533634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73535709	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544585	1.00[AMR][1000 genomes]
rs73545870	1.00[AMR][1000 genomes]
rs73546314	1.00[AMR][1000 genomes]
rs73546326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113602600-113615800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:113610800-113615400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:113611000-113615400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:113611600-113615200	Enhancers	Osteobl	bone
5	chr6:113611800-113615600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:113612200-113614600	Enhancers	Brain Germinal Matrix	brain
7	chr6:113612800-113616800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:113613000-113614200	Enhancers	Brain Anterior Caudate	brain
9	chr6:113613000-113614200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr6:113613000-113614200	Enhancers	HSMMtube	muscle
11	chr6:113613000-113614400	Enhancers	Colon Smooth Muscle	Colon
12	chr6:113613000-113614400	Enhancers	Fetal Lung	lung
13	chr6:113613000-113614800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:113613200-113614200	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:113613200-113614200	Enhancers	HSMM	muscle
16	chr6:113613200-113614400	Enhancers	Fetal Stomach	stomach
17	chr6:113613200-113614600	Enhancers	Adipose Nuclei	Adipose
18	chr6:113613200-113614600	Flanking Active TSS	NHDF-Ad	bronchial
19	chr6:113613400-113614200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:113613400-113614200	Enhancers	NHLF	lung
21	chr6:113613400-113614600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:113613600-113615000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:113613800-113614000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:113613800-113614200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:113613800-113614400	Enhancers	Brain Angular Gyrus	brain

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