Variant report

Variant	rs2842839
Chromosome Location	chr6:113628353-113628354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113627523..113628387-chr6:114257118..114257753,2	MCF-7	breast:
2	chr6:113627469..113628408-chr6:113809119..113809984,4	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1491087	1.00[AMR][1000 genomes]
rs2637522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637530	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774522	1.00[AMR][1000 genomes]
rs2801417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801418	1.00[AMR][1000 genomes]
rs2801421	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801435	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842844	1.00[AFR][1000 genomes]
rs2842847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58633564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327299	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531803	1.00[AMR][1000 genomes]
rs73531810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531818	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531821	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531823	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531888	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533613	1.00[AMR][1000 genomes]
rs73533615	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533619	1.00[AMR][1000 genomes]
rs73533634	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73535709	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544585	1.00[AMR][1000 genomes]
rs73545870	1.00[AMR][1000 genomes]
rs73545893	1.00[AMR][1000 genomes]
rs73546314	1.00[AMR][1000 genomes]
rs73546326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113625400-113629000	Weak transcription	NHDF-Ad	bronchial
2	chr6:113625600-113629200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113625800-113629200	Weak transcription	Osteobl	bone
4	chr6:113625800-113629400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:113627600-113628400	Enhancers	HepG2	liver
6	chr6:113628000-113628400	Enhancers	Colon Smooth Muscle	Colon
7	chr6:113628000-113628400	Enhancers	NHEK	skin

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