Variant report

Variant	rs2842847
Chromosome Location	chr6:113637977-113637978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1491087	1.00[AMR][1000 genomes]
rs2637522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637530	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774522	1.00[AMR][1000 genomes]
rs2801417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801418	1.00[AMR][1000 genomes]
rs2801421	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801435	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842844	1.00[AFR][1000 genomes]
rs58633564	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327299	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531803	1.00[AMR][1000 genomes]
rs73531810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531818	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531821	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531823	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531888	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533613	1.00[AMR][1000 genomes]
rs73533615	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533619	1.00[AMR][1000 genomes]
rs73533634	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73535709	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544585	1.00[AMR][1000 genomes]
rs73545870	1.00[AMR][1000 genomes]
rs73545893	1.00[AMR][1000 genomes]
rs73546314	1.00[AMR][1000 genomes]
rs73546326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113635600-113639200	Weak transcription	Fetal Lung	lung
2	chr6:113636200-113638600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:113636800-113638600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:113637200-113638800	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:113637200-113650200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:113637400-113639600	Weak transcription	Osteobl	bone
7	chr6:113637800-113638600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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