Variant report

Variant	rs2801417
Chromosome Location	chr6:113628769-113628770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1491087	1.00[AMR][1000 genomes]
rs2637522	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637530	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774522	1.00[AMR][1000 genomes]
rs2801418	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801421	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801432	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801435	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842836	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842839	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842844	0.94[AFR][1000 genomes]
rs2842847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58633564	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327299	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531803	1.00[AMR][1000 genomes]
rs73531810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531815	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531818	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531821	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531823	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533619	1.00[AMR][1000 genomes]
rs73533634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73535709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544585	1.00[AMR][1000 genomes]
rs73545870	1.00[AMR][1000 genomes]
rs73545893	1.00[AMR][1000 genomes]
rs73546314	1.00[AMR][1000 genomes]
rs73546326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113625400-113629000	Weak transcription	NHDF-Ad	bronchial
2	chr6:113625600-113629200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:113625800-113629200	Weak transcription	Osteobl	bone
4	chr6:113625800-113629400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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