Variant report

Variant	rs2842844
Chromosome Location	chr6:113635599-113635600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2637522	1.00[AFR][1000 genomes]
rs2637530	0.89[AFR][1000 genomes]
rs2801417	0.94[AFR][1000 genomes]
rs2801421	0.83[AFR][1000 genomes]
rs2801432	0.89[AFR][1000 genomes]
rs2801435	0.83[AFR][1000 genomes]
rs2842836	0.83[AFR][1000 genomes]
rs2842839	1.00[AFR][1000 genomes]
rs2842847	1.00[AFR][1000 genomes]
rs58633564	0.83[AFR][1000 genomes]
rs60327299	0.83[AFR][1000 genomes]
rs73531810	0.83[AFR][1000 genomes]
rs73531815	0.83[AFR][1000 genomes]
rs73531818	0.83[AFR][1000 genomes]
rs73531821	0.83[AFR][1000 genomes]
rs73531823	0.83[AFR][1000 genomes]
rs73531888	0.83[AFR][1000 genomes]
rs73533615	0.83[AFR][1000 genomes]
rs73533634	0.83[AFR][1000 genomes]
rs73535709	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113634800-113637600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:113634800-113637600	Enhancers	NHDF-Ad	bronchial
3	chr6:113635000-113635600	Enhancers	Fetal Lung	lung
4	chr6:113635400-113637600	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links