Variant report

Variant	rs58633564
Chromosome Location	chr6:113612567-113612568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1491087	1.00[AMR][1000 genomes]
rs2637522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774522	1.00[AMR][1000 genomes]
rs2801417	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801418	1.00[AMR][1000 genomes]
rs2801421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842844	0.83[AFR][1000 genomes]
rs2842847	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531803	1.00[AMR][1000 genomes]
rs73531810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73535709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544585	1.00[AMR][1000 genomes]
rs73545870	1.00[AMR][1000 genomes]
rs73546314	1.00[AMR][1000 genomes]
rs73546326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113602600-113615800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:113610800-113613200	Weak transcription	Fetal Brain Male	brain
3	chr6:113610800-113615400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:113611000-113615400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:113611600-113612600	Enhancers	HUVEC	blood vessel
6	chr6:113611600-113613200	Enhancers	NHDF-Ad	bronchial
7	chr6:113611600-113615200	Enhancers	Osteobl	bone
8	chr6:113611800-113615600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:113612000-113613400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:113612200-113613200	Weak transcription	HSMM	muscle
11	chr6:113612200-113614600	Enhancers	Brain Germinal Matrix	brain

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