Variant report

Variant	rs2842836
Chromosome Location	chr6:113602766-113602767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1491087	1.00[AMR][1000 genomes]
rs2637522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2637530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774522	1.00[AMR][1000 genomes]
rs2801417	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801418	1.00[AMR][1000 genomes]
rs2801421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801432	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2801435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2842841	1.00[AMR][1000 genomes]
rs2842844	0.83[AFR][1000 genomes]
rs2842847	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58633564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531803	1.00[AMR][1000 genomes]
rs73531810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73531888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533696	1.00[AMR][1000 genomes]
rs73535709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544585	1.00[AMR][1000 genomes]
rs73546314	1.00[AMR][1000 genomes]
rs73546326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604518	chr6:113457727-113700723	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113601000-113603200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:113601000-113603800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:113601200-113602800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:113601200-113602800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:113601200-113603000	Enhancers	NHDF-Ad	bronchial
6	chr6:113601400-113602800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:113601400-113602800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:113601400-113603000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:113601400-113603000	Enhancers	NHLF	lung
10	chr6:113601600-113603000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:113601600-113603200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:113601800-113603000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:113602200-113602800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:113602200-113602800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:113602200-113602800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:113602200-113602800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:113602200-113603000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:113602200-113603000	Enhancers	Fetal Lung	lung
19	chr6:113602200-113603000	Enhancers	Osteobl	bone
20	chr6:113602400-113602800	Enhancers	NH-A	brain
21	chr6:113602400-113603000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:113602600-113603000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:113602600-113611800	Weak transcription	HSMM	muscle
24	chr6:113602600-113615800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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