Variant report

Variant	rs73548477
Chromosome Location	chr9:116509680-116509681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60769152	1.00[AMR][1000 genomes]
rs73548538	1.00[AMR][1000 genomes]
rs73548540	1.00[AMR][1000 genomes]
rs73548554	1.00[AMR][1000 genomes]
rs73548557	1.00[AMR][1000 genomes]
rs73550446	1.00[AMR][1000 genomes]
rs73550942	1.00[AMR][1000 genomes]
rs73550944	1.00[AMR][1000 genomes]
rs73550967	1.00[AMR][1000 genomes]
rs73552319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv12963	chr9:116506433-116509946	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116508600-116515400	Weak transcription	Pancreas	Pancrea
2	chr9:116509000-116513600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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