Variant report
| Variant | rs73550446 |
|---|---|
| Chromosome Location | chr9:116624073-116624074 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000157657 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs60769152 | 1.00[AMR][1000 genomes] |
| rs73548477 | 1.00[AMR][1000 genomes] |
| rs73548538 | 1.00[AMR][1000 genomes] |
| rs73548540 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73548554 | 1.00[AMR][1000 genomes] |
| rs73548557 | 1.00[AMR][1000 genomes] |
| rs73550942 | 1.00[AMR][1000 genomes] |
| rs73550944 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73550967 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73552319 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430093 | chr9:116330446-117325446 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
