Variant report

Variant	rs73552319
Chromosome Location	chr9:116637699-116637700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr9:116637662-116637969	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr9:116637608-116637913	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:20880684..20883231-chr9:116637446..116639619,2	MCF-7	breast:
2	chr9:116637031..116639708-chr9:116859646..116861440,2	MCF-7	breast:
3	chr9:116630964..116633382-chr9:116635893..116638560,3	K562	blood:
4	chr9:116612441..116615923-chr9:116636508..116640931,4	MCF-7	breast:

Variant related genes	Relation type
ZNF618	TF binding region
ENSG00000200225	Chromatin interaction
ENSG00000136883	Chromatin interaction
ENSG00000129566	Chromatin interaction
ENSG00000232905	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60769152	1.00[AMR][1000 genomes]
rs73548477	1.00[AMR][1000 genomes]
rs73548538	1.00[AMR][1000 genomes]
rs73548540	1.00[AMR][1000 genomes]
rs73548554	1.00[AMR][1000 genomes]
rs73548557	1.00[AMR][1000 genomes]
rs73550446	1.00[AMR][1000 genomes]
rs73550942	1.00[AMR][1000 genomes]
rs73550944	1.00[AMR][1000 genomes]
rs73550967	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv3438734	chr9:116636881-116639879	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv825055	chr9:116637334-116641268	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116634400-116637800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:116635400-116637800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr9:116635400-116637800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:116636000-116637800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:116636000-116638000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:116636600-116637800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:116636600-116637800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:116636600-116638000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:116636600-116638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:116636600-116638000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:116636600-116638000	Weak transcription	HMEC	breast
12	chr9:116636800-116637800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:116637000-116637800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:116637200-116637800	Enhancers	Fetal Lung	lung
15	chr9:116637400-116637800	Enhancers	A549	lung
16	chr9:116637600-116637800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr9:116637600-116637800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr9:116637600-116637800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:116637600-116637800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:116637600-116637800	Enhancers	NHEK	skin
21	chr9:116637600-116638200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
22	chr9:116637600-116639400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:116637600-116639400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:116637600-116639800	Active TSS	Right Atrium	heart
25	chr9:116637600-116640400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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