Variant report

Variant	rs73548540
Chromosome Location	chr9:116561113-116561114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60769152	1.00[AMR][1000 genomes]
rs73548477	1.00[AMR][1000 genomes]
rs73548538	1.00[AMR][1000 genomes]
rs73548554	1.00[AMR][1000 genomes]
rs73548557	1.00[AMR][1000 genomes]
rs73550446	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550942	1.00[AMR][1000 genomes]
rs73550944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552319	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116557800-116569800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116560400-116561200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:116560400-116561600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:116560800-116561200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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