Variant report

Variant	rs73553913
Chromosome Location	chr16:59242577-59242578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1000101	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58022619	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58273288	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73553914	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73553921	0.94[ASN][1000 genomes]
rs8059079	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833247	chr16:59132198-59293527	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59235800-59244600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:59236200-59243000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr16:59236200-59243400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr16:59239000-59244200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr16:59239400-59244000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr16:59239600-59243000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr16:59239800-59243800	Weak transcription	A549	lung
8	chr16:59241400-59243000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links