Variant report
| Variant | rs58022619 |
|---|---|
| Chromosome Location | chr16:59249397-59249398 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1000101 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10492912 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs17258066 | 0.80[EUR][1000 genomes] |
| rs17258073 | 0.80[EUR][1000 genomes] |
| rs2406767 | 0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2897522 | 0.83[AMR][1000 genomes] |
| rs4426343 | 0.80[EUR][1000 genomes] |
| rs56959612 | 0.81[AMR][1000 genomes] |
| rs58273288 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61590783 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs73553913 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73553914 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73553921 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73553940 | 0.83[AMR][1000 genomes] |
| rs73553978 | 0.80[EUR][1000 genomes] |
| rs8043822 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs8048313 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs8059079 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8061364 | 0.80[EUR][1000 genomes] |
| rs8182142 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs9923998 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs9934151 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833247 | chr16:59132198-59293527 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:59245800-59250200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
