Variant report

Variant	rs17258073
Chromosome Location	chr16:59309479-59309480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1000101	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10492912	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10492916	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11865643	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12102966	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17185925	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17185932	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17185953	0.87[EUR][1000 genomes]
rs17185988	0.87[EUR][1000 genomes]
rs17258066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17258122	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17258129	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17258157	0.87[EUR][1000 genomes]
rs17258178	0.87[EUR][1000 genomes]
rs1978488	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2406767	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28413921	0.87[EUR][1000 genomes]
rs2897522	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4426343	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56959612	0.94[ASN][1000 genomes]
rs57159649	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58022619	0.80[EUR][1000 genomes]
rs58273288	0.83[EUR][1000 genomes]
rs59292600	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61590783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7188192	0.87[EUR][1000 genomes]
rs73553914	0.80[EUR][1000 genomes]
rs73553921	0.84[EUR][1000 genomes]
rs73553940	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73553978	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555951	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8043822	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8048313	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8059079	0.92[EUR][1000 genomes]
rs8060477	0.87[EUR][1000 genomes]
rs8061364	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8182142	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9923998	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9934151	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59308400-59309600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:59309400-59309600	Enhancers	Fetal Heart	heart

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