Variant report

Variant	rs17258122
Chromosome Location	chr16:59342659-59342660
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1000101	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10492912	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10492916	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11865643	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12102966	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17185925	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17185953	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17185988	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17258066	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17258073	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17258129	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17258157	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17258178	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17258185	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1978488	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2406767	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28413921	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2897522	0.85[ASN][1000 genomes]
rs4426343	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56959612	0.81[ASN][1000 genomes]
rs57159649	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59292600	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61590783	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7188192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73553940	0.81[ASN][1000 genomes]
rs73553978	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73555951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8043822	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs8048291	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8048313	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8059079	0.87[EUR][1000 genomes]
rs8060477	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8061364	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8182142	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9923998	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9928215	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9934151	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59332000-59362600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:59340800-59343000	Weak transcription	A549	lung

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