Variant report

Variant	rs1978488
Chromosome Location	chr16:59331286-59331287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10492912	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10492916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865643	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12102966	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17185925	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17185932	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17185953	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17185988	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17258066	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17258073	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17258122	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17258129	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17258157	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17258178	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17258185	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2406767	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28413921	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2897522	0.87[ASN][1000 genomes]
rs4426343	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56959612	0.83[ASN][1000 genomes]
rs57159649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59292600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61590783	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7188192	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73553940	0.83[ASN][1000 genomes]
rs73553978	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73555951	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8043822	0.87[ASN][1000 genomes]
rs8048291	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8048313	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8059079	0.83[EUR][1000 genomes]
rs8060477	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8061364	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8182142	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9923998	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9928215	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9934151	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59329200-59331400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:59329800-59331400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr16:59329800-59331600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr16:59330200-59331600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr16:59330600-59331600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr16:59330800-59332000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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