Variant report

Variant	rs2406767
Chromosome Location	chr16:59292190-59292191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1000101	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10492912	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492916	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11865643	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12102966	0.87[EUR][1000 genomes]
rs17185925	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17185932	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17185953	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17185988	0.87[EUR][1000 genomes]
rs17258066	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17258073	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17258122	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17258129	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17258157	0.87[EUR][1000 genomes]
rs17258178	0.87[EUR][1000 genomes]
rs1978488	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28413921	0.87[EUR][1000 genomes]
rs2897522	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56959612	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57159649	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58022619	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58273288	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59292600	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61590783	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188192	0.87[EUR][1000 genomes]
rs73553914	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73553921	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73553940	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73553978	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73555951	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8043822	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048313	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8059079	0.92[EUR][1000 genomes]
rs8060477	0.87[EUR][1000 genomes]
rs8061364	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8182142	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9923998	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934151	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833247	chr16:59132198-59293527	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59291400-59293000	Enhancers	Primary T cells from cord blood	blood
2	chr16:59291600-59292600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr16:59292000-59294200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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