Variant report

Variant	rs17185988
Chromosome Location	chr16:59363073-59363074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1000101	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10492912	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10492916	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10492917	0.91[ASN][1000 genomes]
rs11865643	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12102966	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13331749	0.91[ASN][1000 genomes]
rs13336506	0.91[ASN][1000 genomes]
rs17185925	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17185932	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17185953	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17186051	0.85[ASN][1000 genomes]
rs17258066	0.87[EUR][1000 genomes]
rs17258073	0.87[EUR][1000 genomes]
rs17258122	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17258129	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17258157	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17258178	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17258185	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17258247	0.91[ASN][1000 genomes]
rs1828342	0.85[ASN][1000 genomes]
rs1978488	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2406767	0.87[EUR][1000 genomes]
rs28413921	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28815512	0.86[ASN][1000 genomes]
rs4426343	0.87[EUR][1000 genomes]
rs57159649	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57452945	0.91[ASN][1000 genomes]
rs59292600	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61590783	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7185818	0.91[ASN][1000 genomes]
rs7188192	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7203225	0.91[ASN][1000 genomes]
rs73553978	0.87[EUR][1000 genomes]
rs73555951	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73563808	0.86[ASN][1000 genomes]
rs8043822	0.86[AFR][1000 genomes]
rs8044360	0.91[ASN][1000 genomes]
rs8048291	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8048313	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8059079	0.87[EUR][1000 genomes]
rs8060477	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8061364	0.87[EUR][1000 genomes]
rs8182142	0.87[EUR][1000 genomes]
rs9923998	0.87[EUR][1000 genomes]
rs9928215	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934151	0.87[EUR][1000 genomes]
rs9939007	0.91[ASN][1000 genomes]
rs9939608	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59359400-59364200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:59362400-59363600	Enhancers	Fetal Brain Male	brain
3	chr16:59362400-59364600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr16:59362600-59363400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:59362600-59363600	Enhancers	Brain Germinal Matrix	brain
6	chr16:59362800-59364600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:59363000-59363200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr16:59363000-59363800	Enhancers	Fetal Brain Female	brain
9	chr16:59363000-59364200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr16:59363000-59364400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr16:59363000-59364600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr16:59363000-59364600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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