Variant report

Variant	rs8043822
Chromosome Location	chr16:59293389-59293390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1000101	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10492912	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492916	0.87[ASN][1000 genomes]
rs11865643	0.85[ASN][1000 genomes]
rs17185925	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17185932	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17185988	0.86[AFR][1000 genomes]
rs17258066	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17258073	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17258122	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17258129	0.81[ASN][1000 genomes]
rs17258157	0.86[AFR][1000 genomes]
rs17258185	0.86[AFR][1000 genomes]
rs1978488	0.87[ASN][1000 genomes]
rs2406767	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2897522	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426343	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56959612	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57159649	0.86[ASN][1000 genomes]
rs58022619	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58273288	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59292600	0.87[ASN][1000 genomes]
rs61590783	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73553914	0.83[AMR][1000 genomes]
rs73553921	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73553940	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73553978	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73555951	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8048313	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8059079	0.83[EUR][1000 genomes]
rs8061364	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8182142	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9923998	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934151	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833247	chr16:59132198-59293527	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59292000-59294200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr16:59292200-59294600	Enhancers	Dnd41	blood
3	chr16:59292600-59293400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr16:59292600-59293800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr16:59292800-59293600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr16:59292800-59294600	Enhancers	Primary hematopoietic stem cells	blood
7	chr16:59292800-59294600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr16:59293000-59293800	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr16:59293000-59294200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr16:59293000-59294600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr16:59293200-59293400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr16:59293200-59293600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr16:59293200-59293600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr16:59293200-59293600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr16:59293200-59293600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr16:59293200-59293600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr16:59293200-59294600	Enhancers	Fetal Thymus	thymus
18	chr16:59293200-59294600	Enhancers	HSMM	muscle
19	chr16:59293200-59294600	Enhancers	HSMMtube	muscle

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