Variant report

Variant	rs8059079
Chromosome Location	chr16:59260634-59260635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1000101	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492912	0.92[EUR][1000 genomes]
rs10492916	0.83[EUR][1000 genomes]
rs11865643	0.83[EUR][1000 genomes]
rs12102966	0.87[EUR][1000 genomes]
rs17185925	0.87[EUR][1000 genomes]
rs17185932	0.87[EUR][1000 genomes]
rs17185953	0.87[EUR][1000 genomes]
rs17185988	0.87[EUR][1000 genomes]
rs17258066	0.92[EUR][1000 genomes]
rs17258073	0.92[EUR][1000 genomes]
rs17258122	0.87[EUR][1000 genomes]
rs17258129	0.87[EUR][1000 genomes]
rs17258157	0.87[EUR][1000 genomes]
rs17258178	0.87[EUR][1000 genomes]
rs1978488	0.83[EUR][1000 genomes]
rs2406767	0.92[EUR][1000 genomes]
rs28413921	0.87[EUR][1000 genomes]
rs2897522	0.83[EUR][1000 genomes]
rs4426343	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56959612	0.82[ASN][1000 genomes]
rs57159649	0.83[EUR][1000 genomes]
rs58022619	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58273288	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59292600	0.83[EUR][1000 genomes]
rs61590783	0.92[EUR][1000 genomes]
rs7188192	0.87[EUR][1000 genomes]
rs73553913	0.87[ASN][1000 genomes]
rs73553914	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73553921	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73553940	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73553978	0.92[EUR][1000 genomes]
rs73555951	0.87[EUR][1000 genomes]
rs8043822	0.83[EUR][1000 genomes]
rs8048313	0.92[EUR][1000 genomes]
rs8060477	0.87[EUR][1000 genomes]
rs8061364	0.92[EUR][1000 genomes]
rs8182142	0.92[EUR][1000 genomes]
rs9923998	0.92[EUR][1000 genomes]
rs9934151	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833247	chr16:59132198-59293527	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3351788	chr16:59259051-59261399	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3403477	chr16:59259851-59260849	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59258800-59263400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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