Variant report

Variant	rs73553940
Chromosome Location	chr16:59277116-59277117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1000101	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10492912	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10492916	0.83[ASN][1000 genomes]
rs11865643	0.81[ASN][1000 genomes]
rs17185925	0.81[ASN][1000 genomes]
rs17185932	0.81[ASN][1000 genomes]
rs17185953	0.84[AFR][1000 genomes]
rs17258066	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17258073	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17258122	0.81[ASN][1000 genomes]
rs1978488	0.83[ASN][1000 genomes]
rs2406767	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2897522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4426343	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56959612	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57159649	0.82[ASN][1000 genomes]
rs58022619	0.83[AMR][1000 genomes]
rs58273288	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59292600	0.83[ASN][1000 genomes]
rs61590783	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73553914	0.83[AMR][1000 genomes]
rs73553921	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73553978	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8043822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8048313	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8059079	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8061364	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8182142	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9923998	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9934151	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833247	chr16:59132198-59293527	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59276800-59277400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr16:59277000-59277600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links