Variant report

Variant	rs1000101
Chromosome Location	chr16:59270016-59270017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10492912	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12102966	0.84[EUR][1000 genomes]
rs17185925	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17185932	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17185953	0.84[EUR][1000 genomes]
rs17185988	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17258066	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17258073	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17258122	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17258129	0.84[EUR][1000 genomes]
rs17258157	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17258178	0.84[EUR][1000 genomes]
rs17258185	0.83[AFR][1000 genomes]
rs2406767	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28413921	0.84[EUR][1000 genomes]
rs2897522	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4426343	0.88[EUR][1000 genomes]
rs56959612	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58022619	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58273288	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61590783	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7188192	0.84[EUR][1000 genomes]
rs73553913	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73553914	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73553921	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73553940	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73553978	0.88[EUR][1000 genomes]
rs73555951	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8043822	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8048313	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8059079	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8060477	0.84[EUR][1000 genomes]
rs8061364	0.88[EUR][1000 genomes]
rs8182142	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9923998	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9934151	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833247	chr16:59132198-59293527	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59269600-59271000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:59269600-59271600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr16:59269600-59271800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr16:59269600-59271800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr16:59269800-59271200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr16:59269800-59271800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr16:59270000-59270200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:59270000-59271800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr16:59270000-59271800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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