Variant report

Variant	rs9923998
Chromosome Location	chr16:59303135-59303136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1000101	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10492912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492916	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11865643	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12102966	0.87[EUR][1000 genomes]
rs17185925	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17185932	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17185953	0.87[EUR][1000 genomes]
rs17185988	0.87[EUR][1000 genomes]
rs17258066	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17258073	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17258122	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17258129	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17258157	0.87[EUR][1000 genomes]
rs17258178	0.87[EUR][1000 genomes]
rs1978488	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2406767	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413921	0.87[EUR][1000 genomes]
rs2897522	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56959612	0.96[ASN][1000 genomes]
rs57159649	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58022619	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58273288	0.83[EUR][1000 genomes]
rs59292600	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61590783	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7188192	0.87[EUR][1000 genomes]
rs73553914	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73553921	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73553940	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73553978	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73555951	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8043822	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048313	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8059079	0.92[EUR][1000 genomes]
rs8060477	0.87[EUR][1000 genomes]
rs8061364	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8182142	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9934151	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59301200-59303200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr16:59301600-59303600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr16:59302400-59303400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr16:59302400-59303600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr16:59302800-59303400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links