Variant report

Variant	rs73571906
Chromosome Location	chr16:80177668-80177669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12051173	1.00[AFR][1000 genomes]
rs58944962	1.00[AMR][1000 genomes]
rs73573909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573935	1.00[AMR][1000 genomes]
rs73573938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73574002	1.00[AMR][1000 genomes]
rs73575815	1.00[AMR][1000 genomes]
rs73575816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575832	1.00[AMR][1000 genomes]
rs73575834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575840	1.00[AMR][1000 genomes]
rs73575842	1.00[AMR][1000 genomes]
rs73575850	1.00[AMR][1000 genomes]
rs73583878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585968	1.00[AMR][1000 genomes]
rs73585997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80176200-80178800	Enhancers	HepG2	liver
2	chr16:80177000-80178000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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