Variant report
| Variant | rs73583878 |
|---|---|
| Chromosome Location | chr16:80133058-80133059 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12051173 | 1.00[AFR][1000 genomes] |
| rs58944962 | 1.00[AMR][1000 genomes] |
| rs73571906 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73573909 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73573930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73573932 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73573935 | 1.00[AMR][1000 genomes] |
| rs73573938 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73574002 | 1.00[AMR][1000 genomes] |
| rs73575815 | 1.00[AMR][1000 genomes] |
| rs73575816 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73575832 | 1.00[AMR][1000 genomes] |
| rs73575834 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73575837 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73575840 | 1.00[AMR][1000 genomes] |
| rs73575842 | 1.00[AMR][1000 genomes] |
| rs73575850 | 1.00[AMR][1000 genomes] |
| rs73585968 | 1.00[AMR][1000 genomes] |
| rs73585997 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73589924 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv906995 | chr16:80094975-80166677 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv833298 | chr16:80122337-80314603 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80127000-80137200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
