Variant report

Variant	rs73585968
Chromosome Location	chr16:80146294-80146295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58944962	1.00[AMR][1000 genomes]
rs73571906	1.00[AMR][1000 genomes]
rs73573909	1.00[AMR][1000 genomes]
rs73573930	1.00[AMR][1000 genomes]
rs73573932	1.00[AMR][1000 genomes]
rs73573935	1.00[AMR][1000 genomes]
rs73573938	1.00[AMR][1000 genomes]
rs73574002	1.00[AMR][1000 genomes]
rs73575815	1.00[AMR][1000 genomes]
rs73575816	1.00[AMR][1000 genomes]
rs73575832	1.00[AMR][1000 genomes]
rs73575834	1.00[AMR][1000 genomes]
rs73575837	1.00[AMR][1000 genomes]
rs73575840	1.00[AMR][1000 genomes]
rs73575842	1.00[AMR][1000 genomes]
rs73575850	1.00[AMR][1000 genomes]
rs73583878	1.00[AMR][1000 genomes]
rs73585997	1.00[AMR][1000 genomes]
rs73589924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80140200-80151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:80143000-80148000	Weak transcription	HMEC	breast
4	chr16:80143400-80151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:80145000-80146400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr16:80146200-80147600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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